miRBase entry: gma-MIR1516c

Stem-loop gma-MIR1516c


Accession
MI0019723
Description
Glycine max gma-MIR1516c precursor miRNA

Literature search
1 open access papers mention gma-MIR1516c
(1 sentences)

Sequence

ugaucauggcAAUGUCUGGGCUUAGCGAGGCGGUcacgagcuuagcgugcuuuuggguuucuucaugguccuucuucgugcuaagcuugagcuugccugcuaagcgaggaggugcguugagcc
...(((..(((.(.(((..(((((((.((((((.(.(((((((((((((.....(((..((.....)).)))....))))))))))))).).)))))))))))))..))).))))..)))...

Structure
uga   ug   A G   GG       G      U a             cuuuu   uu  u 
   uca  gcA U UCU  GCUUAGC AGGCGG c cgagcuuagcgug     ggg  uc u
   |||  ||| | |||  ||||||| |||||| | |||||||||||||     |||  || c
   agu  cgu g agg  cgaaucg uccguu g guucgaaucgugc     ucc  gg a
ccg   ug   - g   ag       -      c a             -uucu   -u  u 


Annotation confidence Not enough data
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Genome context
chr4: 40141067-40141189 [+]

Database links

Mature gma-miR1516c

Accession MIMAT0023178
Description Glycine max gma-miR1516c mature miRNA
Sequence 11 - AAUGUCUGGGCUUAGCGAGGCGGU - 34
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553