miRBase entry: gma-MIR5770b

Stem-loop gma-MIR5770b


Accession
MI0019734
Description
Glycine max gma-MIR5770b precursor miRNA
Gene family
MIPF0001501; MIR5770

Literature search
2 open access papers mention gma-MIR5770b
(2 sentences)

Sequence

ggauauuucuUUAGGACUAUGGUUUGGACAAgucacuacucagagcacaaaacaugcuaauuaauuugugugcacuggaauguucucuaccuaucuaucgugagcuauauaucucuuugguuauguucucauaacuucuguuuuugcaaguaaucuugaccagcuucuaguccaaaauccugcagagguugauaacacauuguagugacagaagaguucaguugccacuuguccaauccauaguuuuaaaggaaugaaccc
((.(((((((((((((((((((.((((((((((..(.(((.((((.(((...(((((..((......))..))).))...))).))))...........(((((..(((((.((....)).))))).)))))..((((((((.((((((...........((((((((.((..........))))))))))........)))))).)))))))).....))).)..)))))))))).)))))))))))))))))))..)).

Structure
-  -a                   U          ca u   cagagcacaaaacaugcuaauuaauuugugugcacuggaauguucucuaccuaucuaucgugagcuauauaucucuuugguuauguucucauaa        u      guaaucuugac        a  ccaa 
 gg  uauuucuUUAGGACUAUGG UUGGACAAgu  c acu                                                                                              cuucuguu uugcaa           cagcuucu gu    a
 ||  ||||||||||||||||||| ||||||||||  | |||                                                                                              |||||||| ||||||           |||||||| ||     
 cc  guaaggaaauuuugauacc aaccuguuca  g uga                                                                                              gaagacag gauguu           guuggaga cg    a
c  aa                   u          cc u   -----------------------------------------------------------------------------------------cuuga        u      ---acacaaua        -  uccu 


Annotation confidence Not enough data
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Genome context
chr7: 16812503-16812763 [-]

Database links

Mature gma-miR5770b

Accession MIMAT0023189
Description Glycine max gma-miR5770b mature miRNA
Sequence 11 - UUAGGACUAUGGUUUGGACAA - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553