miRBase entry: gma-MIR171n

Stem-loop gma-MIR171n


Accession
MI0019747
Description
Glycine max gma-MIR171n precursor miRNA
Gene family
MIPF0000030; MIR171_1

Literature search
16 open access papers mention gma-MIR171n
(37 sentences)

Sequence

auacgaauuagcacaugacaaauuaagguauuggcgugccucaauuugaauacauggcuauuaugacaaauccagccuuguaguuugaUUGAGCCGCGUCAAUAUCUUAuuuugcucuucuuuuccaucuccua
................((((((.(((((((((((((((.(((((((....((((.((((..............)))).))))....))))))).))))))))))))))).)))).)).................

Structure
-auacgaauuagcacau  -    u               c       ugaa    u    auuaug 
                 ga caaa uaagguauuggcgug cucaauu    uaca ggcu      a
                 || |||| ||||||||||||||| |||||||    |||| ||||       
                 cu guuu AUUCUAUAACUGCGC GAGUUag    augu ccga      c
auccucuaccuuuucuu  c    u               C       uuug    u    ccuaaa 


Annotation confidence Not enough data
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Genome context
chr12: 35463985-35464118 [+]

Database links

Mature gma-miR171n

Accession MIMAT0023202
Description Glycine max gma-miR171n mature miRNA
Sequence 89 - UUGAGCCGCGUCAAUAUCUUA - 109
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553