Stem-loop sequence gma-MIR172l

Accession

MI0019750 (change log)

Description

Glycine max miR172l stem-loop

Gene family

MIPF0000035; MIR172

Literature search

27 open access papers mention gma-MIR172l
(123 sentences)

Stem-loop

   caguc   a         g           a   ugc    ucagc        c  gacugua     uuauacauacauauauauaca 
5'      ugc ggugcagcg caucaagauuc cac   cuaa     uaggacuu au       cacgc                     u
        ||| ||||||||| ||||||||||| |||   ||||     |||||||| ||       |||||                     g
3'      acg cuacgucgu guaguucuaag gug   gauu     aucuugaa ua       gugug                     u
   cauaa   a         a           g   -ua    ---uu        a  -aguaag     agcagguguuucucgguugca 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Glycine_max_v2.0; GCA_000004515.3): chr13: 43075243-43075420 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0019750

Mature sequence gma-miR172l

• Accession: MIMAT0023205
• Sequence: 148 - ggaaucuugaugaugcugcau - 168
• Evidence: experimental; Illumina [1]

References

1. PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs" Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC Genes Dev. 25:2540-2553(2011).