miRBase entry: gma-MIR319n

Stem-loop gma-MIR319n


Accession
MI0019752
Description
Glycine max gma-MIR319n precursor miRNA
Gene family
MIPF0001104; MIR319

Literature search
17 open access papers mention gma-MIR319n
(42 sentences)

Sequence

ugugaaagcugcagaaauaggaguucccuugcagcccaaaacacccugcaugaacuucauguuguUUUGGACCGAAGGGAGCCCCUucuucuucac
.........((.((((..(((.((((((((.(.(.((((((((....((((((...)))))))))))))).).))))))))).)))..)))).)).

Structure
ugugaaagc  c    au   a        g a c        cccu      a 
         ug agaa  agg guucccuu c g ccaaaaca    gcauga  
         || ||||  ||| |||||||| | | ||||||||    |||||| c
         ac ucuu  UCC CGAGGGAA G C GGUUUugu    uguacu  
--------c  u    cu   C        - C A        ----      u 


Annotation confidence Not enough data
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Genome context
chr13: 28262485-28262580 [-]

Database links

Mature gma-miR319n

Accession MIMAT0023207
Description Glycine max gma-miR319n mature miRNA
Sequence 66 - UUUGGACCGAAGGGAGCCCCU - 86
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553