miRBase entry: gma-MIR394d

Stem-loop gma-MIR394d


Accession
MI0019755
Description
Glycine max gma-MIR394d precursor miRNA
Gene family
MIPF0000100; MIR394

Literature search
8 open access papers mention gma-MIR394d
(12 sentences)

Sequence

cauagacauuUUGGCAUUCUGUCCACCUCCauuggugaugauggccauuuggagguggccaguaugccaaacgggcucugugu
(((((((..((((((((.(((.(((((((((.((((.......))))..))))))))).))).))))))))...).)))))).

Structure
-      - -au        U   U         -u    ga 
 cauaga c   uUUGGCAU CUG CCACCUCCa  uggu  u
 |||||| |   |||||||| ||| |||||||||  ||||  g
 gugucu g   aaaccgua gac gguggaggu  accg  a
u      c ggc        u   c         uu    gu 


Annotation confidence Not enough data
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Genome context
chr15: 3785393-3785475 [+]

Database links

Mature gma-miR394d

Accession MIMAT0023210
Description Glycine max gma-miR394d mature miRNA
Sequence 11 - UUGGCAUUCUGUCCACCUCC - 30
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553