Stem-loop gma-MIR156s

Accession

MI0019761

Description

Glycine max gma-MIR156s precursor miRNA

Literature search

40 open access papers mention gma-MIR156s
(157 sentences)

Sequence

1641196 reads, 3128.0 reads per million, 178 experiments

cuucagguuuguuaauuuguggaggUGACAGAAGAGAGUGAGCACUuggcucuuuccuagcauggaucuuucgugcuaaaagcuguguGCUCAUUCUCUAUCUGUCACCaccuccuuuuacucccucuccucuu
....(((.............(((((((((((((((((((((((((..((((......(((((((((...)))))))))..))))..))))))))))))).))))))...)))))).............)))...

Structure

cuuc   uuuguuaauuugu      ---      -             Uu    cuuucc         u 
    agg             ggaggU   GACAGA AGAGAGUGAGCAC  ggcu      uagcaugga  
    |||             ||||||   |||||| |||||||||||||  ||||      ||||||||| c
    ucc             ccucca   CUGUCU UCUCUUACUCGug  ucga      aucgugcuu  
-uuc   ucucccucauuuu      CCA      A             ug    ----aa         u 

Annotation confidence High

Genome context

chr17: 4021217-4021350 [-]

Mature gma-miR156s-5p

• Accession: MIMAT0023216
• Description: Glycine max gma-miR156s-5p mature miRNA
• Sequence: 26 - UGACAGAAGAGAGUGAGCACU - 46
• Evidence: experimental ; Illumina [1]

Mature gma-miR156s-3p

• Accession: MIMAT0054330
• Description: Glycine max gma-miR156s-3p mature miRNA
• Sequence: 89 - GCUCAUUCUCUAUCUGUCACC - 109
• Evidence: experimental ; unknown

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553