Stem-loop gma-MIR169s

Accession

MI0019763

Description

Glycine max gma-MIR169s precursor miRNA

Gene family

MIPF0000037; MIR169_2

Literature search

23 open access papers mention gma-MIR169s
(100 sentences)

Sequence

ggauggaaugAAGCCAAGGAUGACUUGCCGGagucauauuccaugugaugaugaggcuaaaugcuuugaucgugaaaauugaguuaaccCGGCAAGUAAUCUUUGGCUGCauuuugcucu
((((((((((.((((((((((.(((((((((.((...((((.((.(.((((((((((.....))))).))))).)..)).))))..))))))))))).)))))))))).))))))).)))

Structure

   -       A          G         a  cau    c  -g g     -     u 
gga uggaaug AGCCAAGGAU ACUUGCCGG gu   auuc au  u augau gaggc a
||| ||||||| |||||||||| ||||||||| ||   |||| ||  | ||||| ||||| a
ucu guuuuaC UCGGUUUCUA UGAACGGCc ca   ugag ua  a ugcua uuucg a
   c       G          A         -  -au    u  aa g     g     u 

Annotation confidence Not enough data

Genome context

chr17: 4594138-4594257 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from gma-MIR169s

Mature gma-miR169s-5p

• Accession: MIMAT0023218
• Description: Glycine max gma-miR169s-5p mature miRNA
• Sequence: 11 - AAGCCAAGGAUGACUUGCCGG - 31
• Evidence: experimental ; Illumina [1]

Mature gma-miR169s-3p

• Accession: MIMAT0037454
• Description: Glycine max gma-miR169s-3p mature miRNA
• Sequence: 90 - CGGCAAGUAAUCUUUGGCUGC - 110
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553


2. PubMed ID: 25747880
   Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean
   "Zhao M, Meyers BC, Cai C, Xu W, Ma J"
   "Plant Cell (2015) 27:546-562