Stem-loop gma-MIR396k

Accession

MI0019764

Description

Glycine max gma-MIR396k precursor miRNA

Gene family

MIPF0000047; MIR396

Literature search

25 open access papers mention gma-MIR396k
(146 sentences)

Sequence

uuccucucaaguccuggucaugcuuUUCCACAGCUUUCUUGAACUUcuuaugcaucuuauaucucuccacuuccagcauuuuaagcccuagaaGCUCAAGAAAGCUGUGGGAGAauauggcaauucaggcuuuuaauug
........(((.((((((((((.(((((((((((((((((((.(((((...((...............................))...))))).))))))))))))))))))).))))))....))))))).......

Structure

uuccucuc   u    ----      c                   A     uau  aucuuauaucucuc 
        aag ccug    gucaug uuUUCCACAGCUUUCUUGA CUUcu   gc              c
        ||| ||||    |||||| ||||||||||||||||||| |||||   ||              a
        uuc ggac    cgguau AGAGGGUGUCGAAAGAACU Gaaga   cg              c
-guuaauu   -    uuaa      a                   C     ucc  aauuuuacgaccuu 

Annotation confidence Not enough data

Genome context

Unknown

Mature gma-miR396k-3p

• Accession: MIMAT0023219
• Description: Glycine max gma-miR396k-3p mature miRNA
• Sequence: 94 - GCUCAAGAAAGCUGUGGGAGA - 114
• Evidence: experimental ; Illumina [1]

Mature gma-miR396k-5p

• Accession: MIMAT0032132
• Description: Glycine max gma-miR396k-5p mature miRNA
• Sequence: 26 - UUCCACAGCUUUCUUGAACUU - 46
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553


2. PubMed ID: 24475082
   Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
   Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
   PLoS One (2014) 9:e86153