Stem-loop gma-MIR2111c

Accession

MI0019766

Description

Glycine max gma-MIR2111c precursor miRNA

Literature search

6 open access papers mention gma-MIR2111c
(29 sentences)

Sequence

129822 reads, 167.0 reads per million, 177 experiments

uguauuguaacuaGUGCUUGGGAUGCAGAUUACCucuuccuuaucaccaacccaaaccaguuuaaucaacuugauaacuuccauugguuccaccacacuuugaauuagaacauuguguuaugaaggggUAAUCUGCAUCCUGAGGUUUAgagcaauacu
.(((((((..((((..(((((((((((((((((((((((............((((...((((..((((...))))))))....)))).......((((..((........))..))))...)))))))))))))))))))))))..)))).))))))).

Structure

u       aa    UG                       ----------------------cuuaucaccaac    -acc    ua    a 
 guauugu  cuaG  CUUGGGAUGCAGAUUACCucuuc                                  ccaa    aguu  auca  
 |||||||  ||||  |||||||||||||||||||||||                                  ||||    ||||  |||| c
 cauaacg  gAUU  GAGUCCUACGUCUAAUggggaag                                  gguu    ucaa  uagu  
u       -a    UG                       uauuguguuacaagauuaaguuucacaccaccuu    accu    --    u 

Annotation confidence High

Genome context

chr18: 45690335-45690493 [-]

Mature gma-miR2111c-5p

• Accession: MIMAT0054333
• Description: Glycine max gma-miR2111c-5p mature miRNA
• Sequence: 14 - GUGCUUGGGAUGCAGAUUACC - 34
• Evidence: experimental ; unknown

Mature gma-miR2111c-3p

• Accession: MIMAT0023221
• Description: Glycine max gma-miR2111c-3p mature miRNA
• Sequence: 129 - UAAUCUGCAUCCUGAGGUUUA - 149
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553