miRBase entry: gma-MIR399d

Stem-loop gma-MIR399d


Accession
MI0019776
Description
Glycine max gma-MIR399d precursor miRNA
Gene family
MIPF0000015; MIR399

Literature search
14 open access papers mention gma-MIR399d
(92 sentences)

Sequence

ugggugcauuacagggcaaguucucuuuggcagguaccaacaagcuaugcaauacuauaugugugugcaaucUGCCAAAGGAGAUUUGCCCAGcaauucuccu
.(((.(.(((.(.(((((((((.((((((((((((............((((((((.....)))).)))))))))))))))).))))))))).).))).).)))

Structure
u   u c   a a         c            accaacaagcua    -    u 
 ggg g auu c gggcaaguu ucuuuggcaggu            ugca auac a
 ||| | ||| | ||||||||| ||||||||||||            |||| |||| u
 ucc c uaa G CCCGUUUAG GGAAACCGUcua            acgu ugug a
-   u u   c A         A            ------------    g    u 


Annotation confidence Not enough data
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Genome context
chr5: 35229349-35229451 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from gma-MIR399d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gma-miR399d

Accession MIMAT0023231
Description Glycine max gma-miR399d mature miRNA
Sequence 73 - UGCCAAAGGAGAUUUGCCCAG - 93
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553