miRBase entry: gma-MIR166l

Stem-loop gma-MIR166l


Accession
MI0019780
Description
Glycine max gma-MIR166l precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
36 open access papers mention gma-MIR166l
(211 sentences)

Sequence

uuuccuugcaaaggugagguugagaGGAAUGUUGUCUGGCUCGAGGucauggaggaggagaguacucagaugagugaaaguuuccaauggaaauuuacccucuuaacaccaaaaaaaaaaaaaaaauugauucugggaccaggcuucauuucccccauccaacuuuuguuuuuuauucc
.......((((((((..((.((.(.((((((..((((((((((.((((((((((((((....(((((....))))).((((((((...))))))))..))))))....)))................))))).)))).))))))..)))))).).)).)).))))))))..........

Structure
---uuuccuu        ga  u  a a      UU      -    A     ----------------   ----      agaguacucagaugaguga        a 
          gcaaaggu  gg ug g GGAAUG  GUCUGG CUCG GGuca                ugg    aggagg                   aaguuucc  
          ||||||||  || || | ||||||  |||||| |||| |||||                |||    ||||||                   |||||||| a
          uguuuuca  cc ac c cuuuac  cggacc gggu uuagu                acc    uucucc                   uuuaaagg  
ccuuauuuuu        -a  u  c c      uu      a    c     uaaaaaaaaaaaaaaa   acaa      -----------------ca        u 


Annotation confidence Not enough data
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Genome context
chr6: 45680685-45680863 [-]

Database links

Mature gma-miR166l

Accession MIMAT0023235
Description Glycine max gma-miR166l mature miRNA
Sequence 26 - GGAAUGUUGUCUGGCUCGAGG - 46
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553