miRBase entry: gma-MIR171u

Stem-loop gma-MIR171u


Accession
MI0019785
Description
Glycine max gma-MIR171u precursor miRNA
Gene family
MIPF0000030; MIR171_1

Literature search
15 open access papers mention gma-MIR171u
(36 sentences)

Sequence

uguggggauguuggaacaguucaaucaaaucaaauuuccuaaugauugggugaugguuggauucuuugauaUGAUUGAGCCGUGCCAAUAUCaauuccuacu
.(((((((((((((.((.(((((((((.((((((..(((.(((.(((....))).))))))...)))))).))))))))).)).))))))))....))))).

Structure
u     ----        a  a         a      -uu   u   g   g 
 guggg    gauguugg ac guucaauca aucaaa   ucc aau auu g
 |||||    |||||||| || ||||||||| ||||||   ||| ||| |||  
 caucc    CUAUAACC UG CGAGUUAGU uaguuu   agg uug uag g
u     uuaa        G  C         a      cuu   -   g   u 


Annotation confidence Not enough data
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Genome context
chr8: 923816-923917 [-]

Database links

Mature gma-miR171u

Accession MIMAT0023240
Description Glycine max gma-miR171u mature miRNA
Sequence 72 - UGAUUGAGCCGUGCCAAUAUC - 92
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553