Stem-loop sequence gma-MIR399g

Accession

MI0019787 (change log)

Description

Glycine max miR399g stem-loop

Gene family

MIPF0000015; MIR399

Literature search

14 open access papers mention gma-MIR399g
(87 sentences)

Stem-loop

   guguggaucuucccaguugcagcuguauuaca        u    a         a  -c    u  --ua    ucu 
5'                                 gggcaagu cucc uuggcaggu gc  acua ga    ugca   c
                                   |||||||| |||| ||||||||| ||  |||| ||    ||||   a
3'                                 cccguuua gagg aaccgucua cg  ugau cu    acgu   u
   --------------------uccucuuagcga        -    a         a  ua    u  uuca    uug 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Glycine_max_v2.0; GCA_000004515.3): chr8: 9118325-9118459 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gma-MIR399g

• gma-MIR399g: chr8: 9118325-9118459 [-]
• gma-MIR399f: chr8: 9110335-9110442 [-]

Database links

• miRBase Tracker:MI0019787

Mature sequence gma-miR399g

• Accession: MIMAT0023242
• Sequence: 105 - ugccaaaggagauuugcccag - 125
• Evidence: experimental; Illumina [1]

References

1. PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs" Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC Genes Dev. 25:2540-2553(2011).