miRBase entry: gma-MIR399g

Stem-loop gma-MIR399g


Accession
MI0019787
Description
Glycine max gma-MIR399g precursor miRNA
Gene family
MIPF0000015; MIR399

Literature search
14 open access papers mention gma-MIR399g
(87 sentences)

Sequence

guguggaucuucccaguugcagcuguauuacagggcaaguucuccauuggcagguagccacuaugauaugcaucucauguuugcaacuuucuuaguaugcaaucUGCCAAAGGAGAUUUGCCCAGcgauucuccu
....(((((....((((....)))).......((((((((.((((.(((((((((.((.((((.((..((((.........))))....)).))))..)).))))))))).))))))))))))...)))))....

Structure
gugu     uucccaguugcagcuguauuaca        u    a         a  -c    u  --ua    ucu 
    ggauc                       gggcaagu cucc uuggcaggu gc  acua ga    ugca   c
    |||||                       |||||||| |||| ||||||||| ||  |||| ||    ||||   a
    cuuag                       CCCGUUUA GAGG AACCGUcua cg  ugau cu    acgu   u
uccu     --------------------cGA        -    A         a  ua    u  uuca    uug 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr8: 9118325-9118459 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from gma-MIR399g
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gma-miR399g

Accession MIMAT0023242
Description Glycine max gma-miR399g mature miRNA
Sequence 105 - UGCCAAAGGAGAUUUGCCCAG - 125
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553