Stem-loop gma-MIR169u

Accession

MI0019794

Description

Glycine max gma-MIR169u precursor miRNA

Literature search

23 open access papers mention gma-MIR169u
(96 sentences)

Sequence

127759 reads, 676.0 reads per million, 178 experiments

ucuuguagugCAGCCAAGGAUGACUUGCCGUuaaacuuguuuuggcauuauuauuaugaugaagaccuacuucucaugccaucauguuccuauauaugcuaacuaguuaaccGGCAAGUCAACUCUGGCUACAcaauggcc
.......(((.(((((.((.((((((((((...((((.((..(((((((((...(((((((..................))))))).....))).)))))))).))))...)))))))))).)).))))).))).......

Structure

ucuugua   C     A  A          Uua    u  uu      -   --uau       aagaccua 
       gug AGCCA GG UGACUUGCCG   aacu gu  uggcau uau     uaugaug        c
       ||| ||||| || ||||||||||   |||| ||  |||||| |||     |||||||         
       cAC UCGGU UC ACUGAACGGc   uuga ca  aucgua aua     guacuac        u
ccgguaa   A     C  A          caa    u  --      u   uccuu       cguacucu 

Annotation confidence High

Genome context

chr9: 45847295-45847435 [-]

Mature gma-miR169u-5p

• Accession: MIMAT0023249
• Description: Glycine max gma-miR169u-5p mature miRNA
• Sequence: 11 - CAGCCAAGGAUGACUUGCCGU - 31
• Evidence: experimental ; Illumina [1]

Mature gma-miR169u-3p

• Accession: MIMAT0054360
• Description: Glycine max gma-miR169u-3p mature miRNA
• Sequence: 113 - GGCAAGUCAACUCUGGCUACA - 133
• Evidence: experimental ; unknown

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553