miRBase entry: osa-MIR5794

Stem-loop osa-MIR5794


Accession
MI0019806
Description
Oryza sativa osa-MIR5794 precursor miRNA

Literature search
3 open access papers mention osa-MIR5794
(3 sentences)

Sequence

9288 reads, 6459 reads per million, 2 experiments
caucgauauggcugcaagacuguuugcgauuccccaugaaauccaaauauggaaaucaaaaggcuugaaguagauacuguuggcauacacacaaccauagaguucaucuucagaaccaaauccacguucuugaaaauaugaggagggugcugcuggaagaacaacaaucgcucaucgugauggcugcccaccauggugaccguagaaacuagcauagaaaaaaguagauaucucaagugacuuuguucauuuacguugggauagacaaguaacuaccuuuucuauuuuaguuucuauggucacuuugguggcagccaugauagacagaaacaaaggcucaccgaugaaacccaggacuugcucuacuucaagcuuauuguuuucuauauucuggauuuccUGAGGAAUCACUAGUAGUCGUucagcgauauccaug
(((.(((((.((((...(((((((.(.((((((.((.((((((((((((((((((.(((.((((((((((((((....((((.........))))......((((.(((.(((.(((...(((.(((..........))).))).))).)))..))).)))).........(((((((((((((((((.((((.((((((((((((((((((.((((((((..((((.((((((((((((..........)))).)))))))).........)))).)))))))).)))))))))))))))))).))))))))))))....................))).))))))..............)))))))))))))).))).)))))))))).)))))))).)).)))))).).)))))))...)))).))))).)))

Structure
   c     g    caa       u c      c  u        -          u   a              uacuguuggcauacacacaaccauagaguucaucuucagaaccaaauccacguucuugaaaauaugaggagggugcugcuggaagaacaacaaucgc      -   --------------------        c    u                  c        aa    --------a        -    cuuu 
cau gauau gcug   gacuguu g gauucc ca gaaaucca aauauggaaa caa aggcuugaaguaga                                                                                                 ucaucg uga                    uggcugcc acca ggugaccguagaaacuag auagaaaa  guag         uaucucaa guga    g
||| ||||| ||||   ||||||| | |||||| || |||||||| |||||||||| ||| ||||||||||||||                                                                                                 |||||| |||                    |||||||| |||| |||||||||||||||||| ||||||||  ||||         |||||||| ||||     
gua cuaua cgac   CUGAUGA C CUAAGG GU cuuuaggu uuauaucuuu guu uucgaacuucaucu                                                                                                 aguagc acu                    accgacgg uggu ucacugguaucuuugauu uaucuuuu  cauc         auaggguu cauu    u
   c     g    uUG       U A      A  c        c          u   a              -----------------------------------------------------------------------------------cguucaggacccaa      c   cggaaacaaagacagauagu        -    u                  u        -c    aaugaacag        g    uacu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature osa-miR5794

Accession MIMAT0023261
Description Oryza sativa osa-miR5794 mature miRNA
Sequence 401 - UGAGGAAUCACUAGUAGUCGU - 421
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22158467
    Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
    "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
    "Plant Cell (2011) 23:4185-4207