Stem-loop osa-MIR812r

Accession

MI0019807

Description

Oryza sativa osa-MIR812r precursor miRNA

Gene family

MIPF0000345; MIR812

Literature search

10 open access papers mention osa-MIR812r
(16 sentences)

Sequence

1312 reads, 633 reads per million, 2 experiments

ccuaaaauaaguauaguuuugcacuguucaugucuaacguuugaccguucgucuuauuugaaaauuuuuuaugauuaauauuuuuguuguuauuagauaauaaaacaugaauaguauuuuaugugugacuaacuuuuuuuaauuuucuuauaaauuuuuuaaauaagacggacggucaaACGUUAGACACGAAUUUCUACGGCugcacuuauuuuagg
((((((((((((.(((((.......((((.((((((((((((((((((((((((((((((((((...(((((((........(((((((((....)))))))))(((((((......)))))))((.....))..............))))))).)))))))))))))))))))))))))))))))))).))))......))))).))))))))))))

Structure

            a     uugcacu    a                                  uuu       -----------------------------------uuaauauu         a 
ccuaaaauaagu uaguu       guuc ugucuaacguuugaccguucgucuuauuugaaaa   uuuauga                                           uuuguuguu u
|||||||||||| |||||       |||| ||||||||||||||||||||||||||||||||||   |||||||                                           |||||||||  
ggauuuuauuca guCGG       UAAG ACAGAUUGCAaacuggcaggcagaauaaauuuuu   aaauauu                                           aaauaauag u
            c     -CAUCUU    C                                  --u       cuuuuaauuuuuuucaaucaguguguauuuuaugauaaguaca         a 

Annotation confidence Low

Genome context

Chr11: 18809746-18809963 [+]

Mature osa-miR812r

• Accession: MIMAT0023262
• Description: Oryza sativa osa-miR812r mature miRNA
• Sequence: 180 - ACGUUAGACACGAAUUUCUACGGC - 203
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207