Stem-loop osa-MIR812t

Accession

MI0019817

Description

Oryza sativa osa-MIR812t precursor miRNA

Gene family

MIPF0000345; MIR812

Literature search

9 open access papers mention osa-MIR812t
(15 sentences)

Sequence

460 reads, 337 reads per million, 2 experiments

uauguuccauuuuaagugaaaccaugaguuuuuuaccgaacuuugauugucugucuuauuugaaauuuuuuuauaauuaguauuuuuacuguuaugagaugauaaagcaugaauaauacuuuaugcaugacuuaugcuuuuaauuuuuucaaauuuuuuucaaauaagacgaacgaucaaaguuuagcACGGAAAAUCAUGGCUGCACUUAAaauagaacau
.((((((.((((((((((...((((((.((((((.(.(((((((((((((.((((((((((((((((.(((((((((.((((....))))))))))))).)))(((((((((...((.(.....).))...)))))))))..................))))))))))))).))))))))))))).)...))))))))))))...)))))))))).))))))

Structure

u      c          aaa      g      --a c             c             -------------------------------------------------------   u         u    u 
 auguuc auuuuaagug   ccauga uuuuuu   c gaacuuugauugu ugucuuauuugaa                                                       auu uuuuauaau agua u
 |||||| ||||||||||   |||||| ||||||   | ||||||||||||| |||||||||||||                                                       ||| ||||||||| ||||  
 uacaag uaaAAUUCAC   GGUACU AAAAGG   g uuugaaacuagca gcagaauaaacuu                                                       uag agaguauug ucau u
-      a          GUC      -      CAc a             a             uuuuuaaacuuuuuuaauuuucguauucaguacguauuucauaauaaguacgaaa   u         -    u 

Annotation confidence Not enough data

Genome context

Chr6: 17370227-17370448 [-]

Mature osa-miR812t

• Accession: MIMAT0023272
• Description: Oryza sativa osa-miR812t mature miRNA
• Sequence: 189 - ACGGAAAAUCAUGGCUGCACUUAA - 212
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207