Stem-loop osa-MIR812v

Accession

MI0019823

Description

Oryza sativa osa-MIR812v precursor miRNA

Gene family

MIPF0000345; MIR812

Literature search

9 open access papers mention osa-MIR812v
(16 sentences)

Sequence

117 reads, 90 reads per million, 2 experiments

acugcauccuccguuccaauuuuagugaaaccauaaguuuccgugcuuaauuuuaacuguuuauuuuauuuaaauuuuuuuuauaauuaguauuuuuguuguuaugagaugauaaaacauaaguauuacuuuaugcgugacuuauguuuuuauuuuuuuucaaauaaaaaggacgauuaaaguuagauauaaaaacucAUGGCUGCACUUAAAAUGGGACGGagagaguacu
..(((.((((((((((((.(((.((((...((((.(((((..(((.((((((((((.(((((.((((((((.......(((((((((.............)))))))))....(((((((((((..(((.......))))))))))))))...........)))))))).))))).)))))))))).)))..))))).))))...)))).))).)))))))))).)))))..

Structure

ac   a  -          a   u    aaa    a     cc   c          c     a        aaauuuuuuuuauaauuaguauuuuuguuguuaugagaugau           au   uu 
  ugc uc cuccguucca uuu agug   ccau aguuu  gug uuaauuuuaa uguuu uuuuauuu                                          aaaacauaagu  uac  u
  ||| || |||||||||| ||| ||||   |||| |||||  ||| |||||||||| ||||| ||||||||                                          |||||||||||  |||  a
  aug ag gaGGCAGGGU AAA UCAC   GGUA ucaaa  uau gauugaaauu gcagg aaaauaaa                                          uuuuguauuca  gug  u
uc   -  a          A   U    GUC    c     aa   a          a     a        -------------------------------cuuuuuuuuau           --   cg 

Annotation confidence Not enough data

Genome context

Chr5: 18432835-18433066 [-]

Mature osa-miR812v

• Accession: MIMAT0023278
• Description: Oryza sativa osa-miR812v mature miRNA
• Sequence: 199 - AUGGCUGCACUUAAAAUGGGACGG - 222
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207