Stem-loop hco-mir-5904b

Accession

MI0020045

Description

Haemonchus contortus hco-mir-5904b precursor miRNA

Gene family

MIPF0001444; mir-5904

Sequence

gcuuccccguuuucgagugucgugguggcuuuuacaaacugaaguauuGUAAACCCUCUACUUCACUUCGAAaauaagaagg
.((((...(((((((((((..((((.((..(((((((((....)).))))))).)).))))..))).))))))))..)))).

Structure

g    ccc        -   uc    u  cu       -  u 
 cuuc   guuuucga gug  gugg gg  uuuacaa ac g
 ||||   |||||||| |||  |||| ||  ||||||| ||  
 gaag   uaaAAGCU CAC  CAUC CC  AAAUGuu ug a
g    -aa        U   UU    U  -C       a  a 

Annotation confidence Not enough data

Genome context

Unknown

Mature hco-miR-5904b

• Accession: MIMAT0023373
• Description: Haemonchus contortus hco-miR-5904b mature miRNA
• Sequence: 49 - GUAAACCCUCUACUUCACUUCGAA - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4