miRBase entry: 22216965

Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel

PubMed ID 22216965
Authors Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
Journal BMC Genomics
Volume 13
Pages 4

There are 321 miRNAs associated with this paper:
Name Accession RPM Chromosome Start End Strand Confidence
bma-mir-5838-1 MI0023433 None Bmal_v3_scaffold316 10123 10230 + -
bma-mir-5839 MI0023434 None Bmal_v3_scaffold153 22289 22393 + -
bma-mir-5840 MI0023435 None Bmal_v3_scaffold153 6986 7093 + -
bma-mir-5841 MI0023437 None Bmal_v3_scaffold435 2745 2879 - -
bma-mir-5842 MI0023438 None Bmal_v3_scaffold3 1088154 1088265 - -
bma-mir-5843 MI0023439 None Bmal_v3_scaffold3 1001859 1001963 - -
bma-mir-5844 MI0023440 None Bmal_v3_scaffold8 203709 203830 + -
bma-mir-5845 MI0023441 None Bmal_v3_scaffold6 1914693 1914798 + -
bma-mir-5846-1 MI0023442 None Bmal_v3_scaffold1354 2210 2319 + -
bma-mir-5847-1 MI0023443 None Bmal_v3_scaffold66 112703 112779 + -
bma-mir-5847-2 MI0023444 None Bmal_v3_scaffold66 123659 123735 + -
bma-mir-5848 MI0023446 None Bmal_v3_scaffold110 45475 45552 + -
bma-mir-5849 MI0023447 None Bmal_v3_scaffold72 61794 61874 - -
bma-mir-2i MI0023448 None Bmal_v3_scaffold153 16336 16445 + -
bma-mir-5851 MI0023449 None Bmal_v3_scaffold256 14564 14643 + -
bma-mir-5852 MI0023450 None Bmal_v3_scaffold166 19565 19644 - -
bma-mir-5853 MI0023451 None Bmal_v3_scaffold17 209383 209466 - -
bma-mir-5854 MI0023452 None Bmal_v3_scaffold60 178306 178388 + -
bma-mir-5855 MI0023453 None Bmal_v3_scaffold14 502175 502255 + -
bma-mir-5856a MI0023454 None Bmal_v3_scaffold2 198264 198343 - -
bma-mir-5856b MI0023455 None Bmal_v3_scaffold2 198266 198341 + -
bma-mir-5857 MI0023456 None Bmal_v3_scaffold16 282284 282364 - -
bma-mir-5858 MI0023457 None Bmal_v3_scaffold5 2094851 2094926 + -
bma-mir-5859 MI0023458 None Bmal_v3_scaffold8 1096279 1096359 + -
bma-mir-2g MI0023459 None Bmal_v3_scaffold6 1487667 1487741 - -
bma-mir-5861 MI0023460 None Bmal_v3_scaffold1 1339213 1339318 + -
bma-mir-5862 MI0023462 None Bmal_v3_scaffold19 415158 415269 - -
bma-mir-5863 MI0023464 None Bmal_v3_scaffold12 622038 622144 + -
bma-mir-5864 MI0023466 None Bmal_v3_scaffold152 66233 66360 + -
bma-mir-5865 MI0023467 None Bmal_v3_scaffold148 20001 20131 + -
bma-mir-5866 MI0023468 None Bmal_v3_scaffold14 541732 541836 - -
bma-mir-5867 MI0023469 None Bmal_v3_scaffold2 513724 513836 - -
bma-mir-5868 MI0023470 None Bmal_v3_scaffold3 1273443 1273545 - -
bma-mir-5869 MI0023471 None Bmal_v3_scaffold10 127547 127649 + -
bma-mir-2e MI0023472 None Bmal_v3_scaffold199 29087 29194 - -
bma-mir-5871 MI0023473 None Bmal_v3_scaffold1 875980 876086 - -
bma-mir-5872 MI0023474 None Bmal_v3_scaffold1763 2550 2631 + -
bma-mir-5873 MI0023480 None Bmal_v3_scaffold21 169704 169776 - -
bma-mir-5874 MI0023483 None Bmal_v3_scaffold244 32078 32146 + -
bma-mir-5875 MI0023484 None Bmal_v3_scaffold69 172889 172966 + -
bma-mir-5876 MI0023485 None Bmal_v3_scaffold65 28487 28570 + -
bma-mir-5877 MI0023486 None Bmal_v3_scaffold48 150278 150376 + -
bma-mir-5878 MI0023488 None Bmal_v3_scaffold3 807959 808064 + -
bma-mir-5879a MI0023489 None Bmal_v3_scaffold158 22877 22957 - -
bma-mir-5879b MI0023490 None Bmal_v3_scaffold158 22879 22954 + -
bma-mir-5880a MI0023491 None Bmal_v3_scaffold24 278001 278082 + -
bma-mir-5880b MI0023492 None Bmal_v3_scaffold24 278000 278080 - -
bma-mir-5881a MI0023493 None Bmal_v3_scaffold4 1450466 1450545 - -
bma-mir-5881b MI0023494 None Bmal_v3_scaffold4 1450454 1450556 + -
bma-mir-5882a-1 MI0023496 None Bmal_v3_scaffold129 20808 20912 - -
bma-mir-5882a-2 MI0023497 None Bmal_v3_scaffold17 507482 507586 + -
bma-mir-5882b-1 MI0023499 None Bmal_v3_scaffold129 20824 20903 + -
bma-mir-5882b-2 MI0023500 None Bmal_v3_scaffold17 507491 507570 - -
bma-mir-5883-1 MI0023502 None Bmal_v3_scaffold1706 2431 2531 - -
bma-mir-5883-2 MI0023503 None Bmal_v3_scaffold49 194007 194107 + -
hco-mir-5884 MI0019992 None None None -
hco-mir-133 MI0019993 None None None -
hco-mir-63a MI0019994 None None None -
hco-mir-5885a MI0019995 None None None -
hco-mir-5886a MI0019996 None None None -
hco-mir-5887 MI0019997 None None None -
hco-mir-5888 MI0019998 None None None -
hco-mir-40b MI0019999 None None None -
hco-mir-5889 MI0020000 None None None -
hco-mir-5890a MI0020001 None None None -
hco-mir-79 MI0020002 None None None -
hco-mir-46 MI0020003 None None None -
hco-mir-5891 MI0020004 None None None -
hco-mir-50 MI0020005 None None None -
hco-mir-250 MI0020006 None None None -
hco-mir-5892a MI0020007 None None None -
hco-mir-5893 MI0020008 None None None -
hco-mir-259 MI0020009 None None None -
hco-mir-5894a MI0020010 None None None -
hco-mir-61 MI0020011 None None None -
hco-mir-43 MI0020012 None None None -
hco-mir-5895 MI0020013 None None None -
hco-mir-124 MI0020014 None None None -
hco-mir-45 MI0020015 None None None -
hco-mir-5896 MI0020016 None None None -
hco-mir-5897a MI0020017 None None None -
hco-mir-5898 MI0020018 None None None -
hco-mir-5899 MI0020019 None None None -
hco-lin-4 MI0020020 None None None -
hco-mir-5900 MI0020021 None None None -
hco-mir-87a MI0020022 None None None -
hco-mir-9 MI0020023 None None None -
hco-mir-87b MI0020024 None None None -
hco-mir-86 MI0020025 None None None -
hco-mir-5901 MI0020026 None None None -
hco-mir-5902 MI0020027 None None None -
hco-mir-5903 MI0020028 None None None -
hco-mir-83 MI0020029 None None None -
hco-mir-59 MI0020030 None None None -
hco-mir-5904a MI0020031 None None None -
hco-mir-71 MI0020032 None None None -
hco-mir-5905 MI0020033 None None None -
hco-mir-5906 MI0020034 None None None -
hco-mir-5907 MI0020035 None None None -
hco-mir-5908 MI0020036 None None None -
hco-mir-5897b MI0020037 None None None -
hco-mir-5909 MI0020038 None None None -
hco-mir-5910 MI0020039 None None None -
hco-mir-5911a MI0020040 None None None -
hco-mir-84a MI0020041 None None None -
hco-mir-242 MI0020042 None None None -
hco-mir-5890b MI0020043 None None None -
hco-mir-252 MI0020044 None None None -
hco-mir-5904b MI0020045 None None None -
hco-mir-790 MI0020046 None None None -
hco-mir-234 MI0020047 None None None -
hco-mir-5912a MI0020048 None None None -
hco-mir-277 MI0020049 None None None -
hco-mir-5890c MI0020050 None None None -
hco-mir-236 MI0020051 None None None -
hco-mir-5897c MI0020052 None None None -
hco-mir-5352 MI0020053 None None None -
hco-mir-5913 MI0020054 None None None -
hco-mir-5914 MI0020055 None None None -
hco-mir-5915 MI0020056 None None None -
hco-mir-5916 MI0020057 None None None -
hco-mir-5911b MI0020058 None None None -
hco-mir-7 MI0020059 None None None -
hco-mir-235 MI0020060 None None None -
hco-mir-228 MI0020061 None None None -
hco-mir-5917 MI0020062 None None None -
hco-mir-5918a MI0020063 None None None -
hco-mir-5919 MI0020064 None None None -
hco-mir-5890d MI0020065 None None None -
hco-mir-5920 MI0020066 None None None -
hco-mir-5921 MI0020067 None None None -
hco-mir-5911c MI0020068 None None None -
hco-mir-5922 MI0020069 None None None -
hco-mir-5923 MI0020070 None None None -
hco-mir-5894b MI0020071 None None None -
hco-mir-1 MI0020072 None None None -
hco-mir-5890e MI0020073 None None None -
hco-mir-5924-1 MI0020074 None None None -
hco-mir-5925 MI0020075 None None None -
hco-mir-5926 MI0020076 None None None -
hco-mir-307 MI0020077 None None None -
hco-mir-5927 MI0020078 None None None -
hco-mir-5890f MI0020079 None None None -
hco-mir-255 MI0020080 None None None -
hco-mir-5928a MI0020081 None None None -
hco-mir-993 MI0020082 None None None -
hco-mir-5929 MI0020083 None None None -
hco-mir-2 MI0020084 None None None -
hco-mir-5930 MI0020085 None None None -
hco-mir-5885b MI0020086 None None None -
hco-mir-5904c MI0020087 None None None -
hco-mir-5924-2 MI0020088 None None None -
hco-mir-5931 MI0020089 None None None -
hco-mir-5918b MI0020090 None None None -
hco-mir-5918c MI0020091 None None None -
hco-mir-5912b MI0020092 None None None -
hco-mir-5932 MI0020093 None None None -
hco-mir-5933 MI0020094 None None None -
hco-mir-5934 MI0020095 None None None -
hco-mir-5935 MI0020096 None None None -
hco-mir-40e MI0020097 None None None -
hco-mir-40c MI0020098 None None None -
hco-mir-40d MI0020099 None None None -
hco-mir-5936 MI0020100 None None None -
hco-mir-5937 MI0020101 None None None -
hco-mir-5938 MI0020102 None None None -
hco-mir-5939 MI0020103 None None None -
hco-mir-5940 MI0020104 None None None -
hco-mir-5941 MI0020105 None None None -
hco-mir-5942 MI0020106 None None None -
hco-mir-5928b MI0020107 None None None -
hco-mir-5943 MI0020108 None None None -
hco-mir-63b MI0020109 None None None -
hco-mir-55 MI0020110 None None None -
hco-mir-5918d MI0020111 None None None -
hco-mir-5944 MI0020112 None None None -
hco-mir-40a MI0020113 None None None -
hco-mir-5928c MI0020114 None None None -
hco-mir-5945 MI0020115 None None None -
hco-mir-5946a MI0020116 None None None -
hco-mir-5947 MI0020117 None None None -
hco-mir-5948 MI0020118 None None None -
hco-mir-5949 MI0020119 None None None -
hco-mir-5950 MI0020120 None None None -
hco-mir-5951 MI0020121 None None None -
hco-mir-5952 MI0020122 None None None -
hco-mir-5953 MI0020123 None None None -
hco-mir-5928d MI0020124 None None None -
hco-mir-5954 MI0020125 None None None -
hco-mir-5955 MI0020126 None None None -
hco-mir-5956 MI0020127 None None None -
hco-mir-5957 MI0020128 None None None -
hco-mir-5958 MI0020129 None None None -
hco-mir-5886b MI0020130 None None None -
hco-mir-5959 MI0020131 None None None -
hco-mir-5960 MI0020132 None None None -
hco-mir-5961 MI0020133 None None None -
hco-mir-5962 MI0020134 None None None -
hco-mir-5963 MI0020135 None None None -
hco-mir-60 MI0020136 None None None -
hco-mir-5964 MI0020137 None None None -
hco-mir-5946b MI0020138 None None None -
hco-mir-5946c MI0020139 None None None -
hco-mir-5965 MI0020140 None None None -
hco-mir-5966 MI0020141 None None None -
hco-mir-5967 MI0020142 None None None -
hco-mir-5968 MI0020143 None None None -
hco-mir-5969 MI0020144 None None None -
hco-mir-5970 MI0020145 None None None -
hco-mir-5971 MI0020146 None None None -
hco-mir-5972 MI0020147 None None None -
hco-mir-5973 MI0020148 None None None -
hco-mir-5928e MI0020149 None None None -
hco-mir-5974 MI0020150 None None None -
hco-mir-5975 MI0020151 None None None -
hco-mir-5885c MI0020152 None None None -
hco-mir-5976 MI0020153 None None None -
hco-mir-5892b MI0020154 None None None -
hco-mir-5977 MI0020155 None None None -
hco-mir-5978 MI0020156 None None None -
hco-mir-5979 MI0020157 None None None -
hco-mir-5980 MI0020158 None None None -
hco-mir-5981 MI0020159 None None None -
hco-mir-5982 MI0020160 None None None -
hco-mir-5983 MI0020161 None None None -
hco-mir-5984a MI0020162 None None None -
hco-mir-5984b MI0020163 None None None -
hco-mir-76 MI0020164 None None None -
hco-mir-5985-1 MI0020165 None None None -
hco-mir-5985-2 MI0020166 None None None -
hco-mir-72 MI0020167 None None None -
hco-mir-5986 MI0020168 None None None -
hco-mir-5991 MI0020169 None None None -
hco-mir-5987 MI0020170 None None None -
hco-mir-190 MI0020171 None None None -
hco-mir-5988 MI0020172 None None None -
hco-mir-87c MI0020173 None None None -
hco-mir-5989 MI0020174 None None None -
hco-mir-5990 MI0020175 None None None -
hco-mir-84b MI0020176 None None None -
hco-mir-265 MI0020177 None None None -
hco-mir-2159 MI0020178 None None None -
bma-mir-1175 MI0026288 None Bmal_v3_scaffold43 83421 83528 + -
bma-mir-1822 MI0026289 None Bmal_v3_scaffold132 2432 2547 + -
bma-mir-232 MI0026290 None None None -
bma-mir-239 MI0026291 None Bmal_v3_scaffold3 623437 623543 - -
bma-mir-250 MI0026292 None Bmal_v3_scaffold435 3185 3292 - -
bma-mir-252 MI0026293 None Bmal_v3_scaffold3 1319133 1319237 + -
bma-mir-268 MI0026294 None Bmal_v3_scaffold32 63726 63829 - -
bma-mir-283 MI0026297 None Bmal_v3_scaffold15 750997 751099 + -
bma-mir-2d MI0026298 None Bmal_v3_scaffold153 15939 16048 + -
bma-mir-307 MI0026299 None Bmal_v3_scaffold22 276999 277116 + -
bma-mir-36a-1 MI0026300 None Bmal_v3_scaffold337 15957 16037 + -
bma-mir-36a-2 MI0026301 None Bmal_v3_scaffold337 36127 36207 + -
bma-mir-45 MI0026305 None Bmal_v3_scaffold174 59881 59988 + -
bma-mir-49 MI0026306 None Bmal_v3_scaffold56 93835 93963 + -
bma-mir-5360 MI0026307 None Bmal_v3_scaffold99 105564 105644 - -
bma-mir-5361 MI0026308 None Bmal_v3_scaffold87 58714 58818 - -
bma-mir-5363 MI0026309 None Bmal_v3_scaffold2 1202001 1202107 - -
bma-mir-5364 MI0026310 None Bmal_v3_scaffold8 610893 611032 + -
bma-mir-5365a MI0026311 None Bmal_v3_scaffold33 146573 146656 - -
bma-mir-5365b MI0026312 None Bmal_v3_scaffold33 146574 146655 + -
bma-mir-5366 MI0026313 None Bmal_v3_scaffold1273 2018 2124 - -
bma-mir-60 MI0026314 None Bmal_v3_scaffold13 700944 701027 - -
bma-mir-750 MI0026315 None Bmal_v3_scaffold43 83092 83176 + -
bma-mir-84-1 MI0026316 None Bmal_v3_scaffold7 1916768 1916871 - -
bma-mir-84-2 MI0026317 None Bmal_v3_scaffold192 9573 9676 + -
bma-mir-86 MI0026318 None Bmal_v3_scaffold38 113611 113744 - -
bma-mir-5838-2 MI0029187 None Bmal_v3_scaffold3308 229 336 - -
bma-mir-5846-2 MI0029188 None Bmal_v3_scaffold37 251289 251398 + -
hco-mir-9551 MI0029295 None None None -
bma-mir-5861-2 MI0023461 None None None -
bma-mir-268-2 MI0026295 None None None -
bma-mir-268-3 MI0026296 None None None -
bma-mir-36-3 MI0026302 None None None -
bma-mir-36-4 MI0026303 None None None -
bma-mir-36-5 MI0026304 None None None -
bma-mir-5840-2 MI0023436 None None None -
bma-mir-5862-2 MI0023463 None None None -
bma-mir-5863-2 MI0023465 None None None -
bma-mir-5847-3 MI0023445 None None None -
bma-mir-5877-2 MI0023487 None None None -
bma-mir-5881c MI0023495 None None None -
bma-mir-5882a-3 MI0023498 None None None -
bma-mir-5882b-3 MI0023501 None None None -
bma-mir-5883-3 MI0023504 None None None -
bma-mir-5872-2 MI0023475 None None None -
bma-mir-5872-3 MI0023476 None None None -
bma-mir-5872-4 MI0023477 None None None -
bma-mir-5872-5 MI0023478 None None None -
bma-mir-5872-6 MI0023479 None None None -
bma-mir-5873-2 MI0023481 None None None -
bma-mir-5873-3 MI0023482 None None None -
cel-let-7 MI0000001 15959 chrX 14744173 14744271 - High
cel-lin-4 MI0000002 2214 chrII 5902254 5902347 + High
cel-mir-1 MI0000003 57505 chrI 6172662 6172757 - High
cel-mir-2 MI0000004 1579 chrI 9372768 9372865 - High
cel-mir-35 MI0000006 81584 chrII 11537608 11537704 + High
cel-mir-36 MI0000007 4419 chrII 11537713 11537809 + High
cel-mir-42 MI0000013 559 chrII 11889811 11889905 + High
cel-mir-45 MI0000016 19744 chrII 11880944 11881039 - High
cel-mir-48 MI0000019 63505 chrV 14364412 14364509 - High
cel-mir-50 MI0000021 568 chrI 1738635 1738733 + High
cel-mir-51 MI0000022 1808 chrIV 11026013 11026112 - High
cel-mir-56 MI0000027 3018 chrX 13144691 13144787 - High
cel-mir-58a MI0000029 269408 chrIV 3233254 3233350 + High
cel-mir-63 MI0000034 1712 chrX 17598765 17598868 - High
cel-mir-71 MI0000042 39340 chrI 9379927 9380020 - High
cel-mir-72 MI0000043 52125 chrII 2452838 2452936 + High
cel-mir-81 MI0000052 12922 chrX 2431072 2431179 + High
cel-mir-82 MI0000053 11441 chrX 2435258 2435354 - High
cel-mir-84 MI0000055 4377 chrX 16022404 16022478 - High
cel-mir-86 MI0000057 1328 chrIII 11936637 11936734 - High
cel-mir-124 MI0000302 561 chrIV 11871738 11871833 + High
cel-mir-228 MI0000303 18727 chrIV 5562025 5562122 + High
cel-mir-241 MI0000317 1755 chrV 14366188 14366283 - High
cel-mir-250 MI0000326 3282 chrV 11769917 11770015 - High
cel-mir-265 MI0000345 0 chrIV 12740443 12740528 - -
cel-mir-273 MI0000353 0 chrII 14947039 14947132 + -
cel-mir-58b MI0008204 12 chrIV 6660461 6660519 - -
cel-mir-58c MI0039738 8 chrIV 6660634 6660712 - -