Stem-loop hco-mir-228

Accession

MI0020061

Description

Haemonchus contortus hco-mir-228 precursor miRNA

Gene family

MIPF0000292; mir-228

Literature search

2 open access papers mention hco-mir-228
(2 sentences)

Sequence

ggagaucccgAAAUGGCACUGCAUGAAUUCACGGuuguugcucgggccgugcauccagugguuccauaccgggucgcugccg
((((..((((..((((.(((((.((.((.(((((((........))))))).)).))))))).))))..))))...)).)).

Structure

-  -  -au    AA    C     A  A  U       guu 
 gg ag   cccg  AUGG ACUGC UG AU CACGGuu   g
 || ||   ||||  |||| ||||| || || |||||||    
 cc uc   gggc  uacc uggug ac ua gugccgg   c
g  g  gcu    ca    u     -  c  c       gcu 

Annotation confidence Not enough data

Genome context

Unknown

Mature hco-miR-228

• Accession: MIMAT0023389
• Description: Haemonchus contortus hco-miR-228 mature miRNA
• Sequence: 11 - AAAUGGCACUGCAUGAAUUCACGG - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4