Stem-loop hco-mir-5917

Accession

MI0020062

Description

Haemonchus contortus hco-mir-5917 precursor miRNA

Sequence

ugcguaaaaggagcagcggguccagccgguguuccaggacaaccugGAAAACCGGGUAGACCUGGAGCUccgggcacgc
.((((....(((((..((((((.(.(((((.(((((((....))))))).))))).).))))))..)))))....))))

Structure

u    aaaa     ag      c g     g       a 
 gcgu    ggagc  cggguc a ccggu uuccagg c
 ||||    |||||  |||||| | ||||| |||||||  
 cgca    ccUCG  GUCCAG U GGCCA AAGgucc a
-    cggg     AG      A G     A       a 

Annotation confidence Not enough data

Genome context

Unknown

Mature hco-miR-5917

• Accession: MIMAT0023390
• Description: Haemonchus contortus hco-miR-5917 mature miRNA
• Sequence: 47 - GAAAACCGGGUAGACCUGGAGCU - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4