Stem-loop hco-mir-5941

Accession

MI0020105

Description

Haemonchus contortus hco-mir-5941 precursor miRNA

Sequence

aagcgcggacuguuucauugucugucaguggcagaggcagccgcaucguuacgcagcugccgcuUAACGAUGUGCUGACCUCUGCguucgggcuuauccaguuagcgccg
..((((.(((((.......(((((......(((((((((((.(((((((((.((.......)).))))))))))))).)))))))...))))).....))))).))))..

Structure

aa    g     uuucauu     ucagug       -    c         c  ag 
  gcgc gacug       gucug      gcagagg cagc gcaucguua gc  c
  |||| |||||       |||||      ||||||| |||| ||||||||| ||  u
  cgcg uugac       cgggc      CGUCUCC GUCG UGUAGCAAU cg  g
gc    a     --cuauu     ---uug       A    -         u  cc 

Annotation confidence Not enough data

Genome context

Unknown

Mature hco-miR-5941

• Accession: MIMAT0023436
• Description: Haemonchus contortus hco-miR-5941 mature miRNA
• Sequence: 65 - UAACGAUGUGCUGACCUCUGC - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4