Stem-loop hco-mir-5928c

Accession

MI0020114

Description

Haemonchus contortus hco-mir-5928c precursor miRNA

Gene family

MIPF0001443; mir-5928

Sequence

ggcccaauucUGAAGUAAGGUAGACUAGUAAGGUcaguugauccuacuauucuacuguacuucgaaaucgggcccaa
(((((.(((.(((((((.((((((.(((((.((((....)))).))))).)))))).))))))).))).)))))...

Structure

---     a   c       A      C     A    a 
   ggccc auu UGAAGUA GGUAGA UAGUA GGUc g
   ||||| ||| ||||||| |||||| ||||| ||||  
   ccggg uaa gcuucau ucaucu aucau cuag u
aac     c   a       g      u     c    u 

Annotation confidence Not enough data

Genome context

Unknown

Mature hco-miR-5928c

• Accession: MIMAT0023445
• Description: Haemonchus contortus hco-miR-5928c mature miRNA
• Sequence: 11 - UGAAGUAAGGUAGACUAGUAAGGU - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4