miRBase entry: cca-MIR160a

Stem-loop cca-MIR160a


Accession
MI0021067
Description
Cynara cardunculus cca-MIR160a precursor miRNA
Gene family
MIPF0000032; MIR160

Literature search
3 open access papers mention cca-MIR160a
(3 sentences)

Sequence

augauuUGCCUGGCUCCCUGGAUGCCAucuaagaaaaugauuucaagguugcaaucagucuucuuauauggcaccugaggagucaggcaaacauaa
(((.((((((((((((((.((.((((((.((((((..(((((.((....)).)))))...)))))).)))))))).).))))))))))))))))..

Structure
--   a             - U  A      c      -aa     u  a 
  aug uuUGCCUGGCUCC C GG UGCCAu uaagaa   ugauu ca g
  ||| ||||||||||||| | || |||||| ||||||   ||||| ||  
  uac aaacggacugagg g cc acggua auucuu   acuaa gu g
aa   -             a u  -      u      cug     c  u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature cca-miR160a

Accession MIMAT0024513
Description Cynara cardunculus cca-miR160a mature miRNA
Sequence 7 - UGCCUGGCUCCCUGGAUGCCA - 27
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22272770
    The miRNAome of globe artichoke: conserved and novel micro RNAs and target analysis
    De Paola D, Cattonaro F, Pignone D, Sonnante G
    BMC Genomics (2012) 13:41