Stem-loop ptc-MIR482c

Accession

MI0022048

Description

Populus trichocarpa ptc-MIR482c precursor miRNA

Gene family

MIPF0000403; MIR482

Literature search

7 open access papers mention ptc-MIR482c
(130 sentences)

Sequence

uccuccgccguguuggaaaggaaagggagacugcuuuacuggaagcuuccggUAUGGGAGAGGCGGGAAUGACUcugaaagaacuuagaagagUCUUUCCGAGUCCUCCCAUACCgcagauuuccaguaguuccucccuuuacuuaucuucacuauuccagcagcucugga
(((...((..((((((((((..(((((((...(((..((((((((((..(((((((((((.(((.((((.((((((.............)))))).))))..)))))))))))))).)).)))))))))))..)))))))..))...........))))))))))...)))

Structure

   ucc  cg        -----------  ga       acu   uu        -  uc           A   -G    U      gaaag 
ucc   gc  uguuggaa           ag  aagggag   gcu  acuggaag cu  cggUAUGGGAG GGC  GGAA GACUcu     a
|||   ||  ||||||||           ||  |||||||   |||  |||||||| ||  ||||||||||| |||  |||| ||||||     a
agg   cg  acgaccuu           uc  uucccuc   uga  ugaccuuu ga  gCCAUACCCUC CUG  CCUU CUgaga     c
   ucu  --        aucacuucuau  au       -cu   --        a  -c           -   AG    U      agauu 

Annotation confidence Not enough data

Genome context

CM000353.2: 13549387-13549557 [-]

Mature ptc-miR482c-5p

• Accession: MIMAT0025277
• Description: Populus trichocarpa ptc-miR482c-5p mature miRNA
• Sequence: 53 - UAUGGGAGAGGCGGGAAUGACU - 74
• Evidence: experimental ; miRNAseq [1]

Mature ptc-miR482c-3p

• Accession: MIMAT0025278
• Description: Populus trichocarpa ptc-miR482c-3p mature miRNA
• Sequence: 94 - UCUUUCCGAGUCCUCCCAUACC - 115
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034