miRBase entry: prv-mir-LLT5

Stem-loop prv-mir-LLT5

Accession

MI0022076

Description

Pseudorabies virus prv-mir-LLT5 precursor miRNA

Sequence

ccuguuccccauccuuccacccaugcauucauccgugcggugguggggaUGAGUGGAUGGAUGGAGGCGAGggacgcggu
.((((..(((.((((((((.((((.(((((((((.(((....))).))))))))).)))).)))))).)))))..)))).

Structure

c    uc   a  -      c    g         g   g 
 cugu  ccc uc cuucca ccau cauucaucc ugc g
 ||||  ||| || |||||| |||| ||||||||| |||  
 ggcg  ggG AG GGAGGU GGUA GUGAGUagg gug u
u    ca   -  C      A    G         g   g

Annotation confidence Not enough data

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Genome context

NC_006151.1: 99861-99940 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from prv-mir-LLT5

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature prv-miR-LLT5

Accession	MIMAT0025308
Description	Pseudorabies virus prv-miR-LLT5 mature miRNA
Sequence	50 - UGAGUGGAUGGAUGGAGGCGAG - 71
Evidence	experimental Illumina [1]

References

PubMed ID: 22292087
Pseudorabies virus infected porcine epithelial cell line generates a diverse set of host microRNAs and a special cluster of viral microRNAs
Wu YQ, Chen DJ, He HB, Chen DS, Chen LL, Chen HC, Liu ZF
PLoS One (2012) 7:e30988