Stem-loop prv-mir-LLT8

Accession

MI0022079

Description

Pseudorabies virus prv-mir-LLT8 precursor miRNA

Sequence

ggugcaggcgGUGGGGGCGAAGAUUGGGUUgggugagagacuagaaccgguguucuCAACCCUUCUGGAGCCCUACCcucugugccu
((((((((.(((((((....(((..((((((((...((.(((......))).)))))))))).)))....))))))).)))))))).

Structure

-        c       GCGA   UU        uga  g   ag 
 ggugcagg gGUGGGG    AGA  GGGUUggg   ga acu  a
 |||||||| |||||||    |||  ||||||||   || |||   
 ccgugucu CCAUCCC    UCU  CCCAACuc   uu ugg  a
u        c       GAGG   -U        ---  g   cc 

Annotation confidence Not enough data

Genome context

NC_006151.1: 100211-100297 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from prv-mir-LLT8

Mature prv-miR-LLT8-5p

• Accession: MIMAT0025311
• Description: Pseudorabies virus prv-miR-LLT8-5p mature miRNA
• Sequence: 11 - GUGGGGGCGAAGAUUGGGUU - 30
• Evidence: experimental ; Illumina [1], Ion-Torrent [2]

Mature prv-miR-LLT8-3p

• Accession: MIMAT0037461
• Description: Pseudorabies virus prv-miR-LLT8-3p mature miRNA
• Sequence: 57 - CAACCCUUCUGGAGCCCUACC - 77
• Evidence: experimental ; Ion-Torrent [2]

References

1. PubMed ID: 22292087
   Pseudorabies virus infected porcine epithelial cell line generates a diverse set of host microRNAs and a special cluster of viral microRNAs
   Wu YQ, Chen DJ, He HB, Chen DS, Chen LL, Chen HC, Liu ZF
   PLoS One (2012) 7:e30988


2. PubMed ID: 24475202
   The role of viral and host microRNAs in the Aujeszky's disease virus during the infection process
   Timoneda O, Núñez-Hernández F, Balcells I, Muñoz M, Castelló A, Vera G, Pérez LJ, Egea R, Mir G, Córdoba S, Rosell R, Segalés J, Tomàs A, Sánchez A, Núñez JI
   PLoS One (2014) 9:e86965