miRBase entry: prv-mir-LLT10a

Stem-loop prv-mir-LLT10a

Accession

MI0022081

Description

Pseudorabies virus prv-mir-LLT10a precursor miRNA

Gene family

MIPF0001493; mir-LLT10

Sequence

cggcuuccggggcgcggccggggcgggcuccgcggaucgcaucggcgcgCCGAGCCUGCCCCUUCCGUCGCAccgggggucc
.(((((((((.((((((..(((((((((((.(((...(((....)))))).)))))))))))..))).))).))))))))).

Structure

c         g   -   cc           c   gau   a 
 ggcuuccgg gcg cgg  ggggcgggcuc gcg   cgc u
 ||||||||| ||| |||  ||||||||||| |||   |||  
 cugggggcc CGC GCC  CCCCGUCCGAG Cgc   gcg c
c         A   U   UU           C   ---   g

Annotation confidence Not enough data

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Genome context

NC_006151.1: 101789-101870 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from prv-mir-LLT10a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature prv-miR-LLT10a

Accession	MIMAT0025313
Description	Pseudorabies virus prv-miR-LLT10a mature miRNA
Sequence	50 - CCGAGCCUGCCCCUUCCGUCGCA - 72
Evidence	experimental Illumina [1]

References

PubMed ID: 22292087
Pseudorabies virus infected porcine epithelial cell line generates a diverse set of host microRNAs and a special cluster of viral microRNAs
Wu YQ, Chen DJ, He HB, Chen DS, Chen LL, Chen HC, Liu ZF
PLoS One (2012) 7:e30988