miRBase entry: bta-mir-411c

Stem-loop bta-mir-411c


Accession
MI0022292
Description
Bos taurus bta-mir-411c precursor miRNA
Gene family
MIPF0000126; mir-379

Literature search
1 open access papers mention bta-mir-411c
(1 sentences)

Sequence

4532 reads, 64 reads per million, 63 experiments
gggaguggauGGUUGAUCAGAGAACAUACAUUuugucaaugaUGUAUGUCAACUGAUCCACAGUcccucccuau
(((((.((((.((.((((((...(((((((((........)))))))))...)))))).)).)))))))))...

Structure
---     u    G  U      AGA         uug 
   gggag ggau GU GAUCAG   ACAUACAUU   u
   ||||| |||| || ||||||   |||||||||    
   cccuc ccUG CA CUAGUC   UGUAUGUag   c
uau     -    A  C      AAC         uaa 


Annotation confidence High
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Genome context
chr21: 67867851-67867924 [+]
Clustered miRNAs
17 other miRNAs are < 10 kb from bta-mir-411c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-411c-5p

Accession MIMAT0025545
Description Bos taurus bta-miR-411c-5p mature miRNA
Sequence 11 - GGUUGAUCAGAGAACAUACAUU - 32
Evidence experimental
Illumina [1]

Mature bta-miR-411c-3p

Accession MIMAT0025546
Description Bos taurus bta-miR-411c-3p mature miRNA
Sequence 43 - UGUAUGUCAACUGAUCCACAGU - 64
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21912509
    Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle
    "Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J"
    "Int J Biol Sci (2011) 7:1016-1026