Stem-loop sequence bta-mir-2285m-4

Accession

MI0022306 (change log)

Description

Bos taurus miR-2285m-4 stem-loop

Gene family

MIPF0000747; mir-2284

Literature search

11 open access papers mention bta-mir-2285m-4
(15 sentences)

Stem-loop

   a    a a          u      cag     cuu    g 
5'  auug g uggccaaaaa uucguu   guuuu   gcau g
    |||| | |||||||||| ||||||   |||||   ||||  
3'  uaac c accgguuuuu aaguaa   caaaa   ugug u
   -    c a          c      acg     -ac    a 

Deep sequencing

263 reads, 16.2 reads per million, 68 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr5: 111321886-111321967 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0022306

Mature sequence bta-miR-2285m

• Accession: MIMAT0025533
• Sequence: 51 - aaaacgcaaaugaacuuuuugg - 72
• Deep sequencing: 610 reads, 62 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:bta-miR-2285m

References

1. PMID:21912509 "Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle" Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J Int J Biol Sci. 7:1016-1026(2011).