Stem-loop sequence bta-mir-2285n-5

Accession

MI0022310 (change log)

Description

Bos taurus miR-2285n-5 stem-loop

Gene family

MIPF0000747; mir-2284

Literature search

11 open access papers mention bta-mir-2285n-5
(15 sentences)

Stem-loop

   u      u         a         a        uaag 
5'  uggauu ggcccaaaa guucauuug guuuuucc    a
    |||||| ||||||||| ||||||||| ||||||||    g
3'  accuaa ccggguuuu caaguaagc caaaaagg    c
   g      -         -         c        uaua 

Deep sequencing

5798 reads, 143 reads per million, 77 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr8: 102786395-102786475 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0022310

Mature sequence bta-miR-2285n

• Accession: MIMAT0025531
• Sequence: 50 - aaaaacccgaaugaacuuuugg - 71
• Deep sequencing: 24101 reads, 77 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:bta-miR-2285n

References

1. PMID:21912509 "Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle" Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J Int J Biol Sci. 7:1016-1026(2011).