Stem-loop sequence bta-mir-2284z-1

Accession

MI0022320 (change log)

Description

Bos taurus miR-2284z-1 stem-loop

Gene family

MIPF0000747; mir-2284

Literature search

13 open access papers mention bta-mir-2284z-1
(32 sentences)

Stem-loop

   ua  c     aa           ug         a   c 
5'   gg uuggc  aaaaguuuguu  gguuuuucu uaa a
     || |||||  |||||||||||  ||||||||| |||  
3'   cc aaucg  uuuucaaacaa  ccaaaagga guu u
   ga  c     -g           gu         c   c 

Deep sequencing

14346 reads, 58.1 reads per million, 74 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr10: 9111084-9111162 [-]
• Overlapping transcripts:

  sense

  ENSBTAT00000006605 ; AP3B1-201; intron 22

Database links

• RNAcentral:URS000075A9C0_9913
• miRBase Tracker:MI0022320

Mature sequence bta-miR-2284z

• Accession: MIMAT0025559
• Sequence: 11 - aaaaaaguuuguuuggguuuuu - 32
• Deep sequencing: 73137 reads, 73 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:bta-miR-2284z

References

1. PMID:21912509 "Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle" Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J Int J Biol Sci. 7:1016-1026(2011).