Stem-loop sequence bta-mir-2285k-4

Accession

MI0022332 (change log)

Description

Bos taurus miR-2285k-4 stem-loop

Gene family

MIPF0000747; mir-2284

Literature search

11 open access papers mention bta-mir-2285k-4
(16 sentences)

Stem-loop

   a        gc      -  ug agga           
5'  uuggguug  caaaaa uu  u    guuuuucaua 
    ||||||||  |||||| ||  |    ||||||||| u
3'  aacccaac  guuuuu aa  a    caaaagguau 
   -        ua      c  gu aggc           

Deep sequencing

8776 reads, 205 reads per million, 78 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr26: 29573741-29573813 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0022332

Mature sequence bta-miR-2285k

• Accession: MIMAT0024586
• Sequence: 43 - aaaaccggaaugaacuuuuug - 63
• Deep sequencing: 47879 reads, 78 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:bta-miR-2285k

References

1. PMID:21912509 "Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle" Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J Int J Biol Sci. 7:1016-1026(2011).