Stem-loop gga-mir-6545

Accession

MI0022361

Description

Gallus gallus gga-mir-6545 precursor miRNA

Sequence

agguuucucuuguucaauuGGCAGAAAAGGGCUGCAGCUUcaucugaaguacuggagagaAGCUGGAGCUGAUUUUCUGGCAaugacagcaugacagagcauccggc
.((...((((((((..((((.(((((((.((((.(((((((.(((..........)))))))))).))))..))))))).))))...))))....))))...))...

Structure

--a  uuu    ----    -ca    G       -G    G       a   gaag 
   gg   cucu    uguu   auuG CAGAAAA  GGCU CAGCUUc ucu    u
   ||   ||||    ||||   |||| |||||||  |||| ||||||| |||     
   cc   gaga    acga   uaAC GUCUUUU  UCGA GUCGAag aga    a
cgg  uac    cagu    cag    G       AG    G       -   gguc 

Annotation confidence Low

Genome context

chr2: 71893322-71893428 [+]

Mature gga-miR-6545-5p

• Accession: MIMAT0025593
• Description: Gallus gallus gga-miR-6545-5p mature miRNA
• Sequence: 20 - GGCAGAAAAGGGCUGCAGCUU - 40
• Evidence: experimental ; Illumina [1]

Mature gga-miR-6545-3p

• Accession: MIMAT0025594
• Description: Gallus gallus gga-miR-6545-3p mature miRNA
• Sequence: 61 - AGCUGGAGCUGAUUUUCUGGCA - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227