miRBase entry: gga-mir-6545

Stem-loop gga-mir-6545


Accession
MI0022361
Description
Gallus gallus gga-mir-6545 precursor miRNA


Sequence

agguuucucuuguucaauuGGCAGAAAAGGGCUGCAGCUUcaucugaaguacuggagagaAGCUGGAGCUGAUUUUCUGGCAaugacagcaugacagagcauccggc
.((...((((((((..((((.(((((((.((((.(((((((.(((..........)))))))))).))))..))))))).))))...))))....))))...))...

Structure
--a  uuu    ----    -ca    G       -G    G       a   gaag 
   gg   cucu    uguu   auuG CAGAAAA  GGCU CAGCUUc ucu    u
   ||   ||||    ||||   |||| |||||||  |||| ||||||| |||     
   cc   gaga    acga   uaAC GUCUUUU  UCGA GUCGAag aga    a
cgg  uac    cagu    cag    G       AG    G       -   gguc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr2: 71893322-71893428 [+]

Database links

Mature gga-miR-6545-5p

Accession MIMAT0025593
Description Gallus gallus gga-miR-6545-5p mature miRNA
Sequence 20 - GGCAGAAAAGGGCUGCAGCUU - 40
Evidence experimental
Illumina [1]

Mature gga-miR-6545-3p

Accession MIMAT0025594
Description Gallus gallus gga-miR-6545-3p mature miRNA
Sequence 61 - AGCUGGAGCUGAUUUUCUGGCA - 82
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22418847
    Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
    "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
    "RNA Biol (2012) 9:212-227