Stem-loop mdm-MIR156l

Accession

MI0022982

Description

Malus domestica mdm-MIR156l precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

14 open access papers mention mdm-MIR156l
(299 sentences)

Sequence

gagauagagagagagacagaggcagagagagagaaggugaauggaugagggagaguaguagaucacuggacuaguagcgagugguggUGACAGAAGAGAGUGAGCACacucgggcaauuguauaaagccauaccuuugcgugaugugugcucacuucucuuucugucagccgcacgcccyccgcccyccgcccaccgcccaccgccugcgcugcccucccuuucauuaugucuuucuguguuccuccucucgaucuc
(((((.(((((.(((...((.(((((((((.(...(((((......(((((((.(((((..((((((.(........).))))))(((((((((((((((((((((((((((.((((..((((......))))..)))).))).)))))))))).)))).)))))))).))(((.((.....((............)).....)).)))))))).)))))))))))).).))))))))).)).)))))))).)))))

Structure

     a     a   aca  g         g gaa     auggau       a     ------------agaucacuggacuaguagcgaguggu  -        -    -          -   g    uu    aa 
gagau gagag gag   ga gcagagaga a   gguga      gagggag guagu                                      gg UGACAGAA GAGA GUGAGCACac ucg gcaa  guau  a
||||| ||||| |||   || ||||||||| |   |||||      ||||||| |||||                                      || |||||||| |||| |||||||||| ||| ||||  ||||   
cucua cucuc cuc   uu ugucuuucu u   uuacu      uucccuc cgucg                                      cc acugucuu cucu cacucgugug agu cguu  caua  g
     g     -   --c  g         g --a     ------       c     cguccgccacccgccacccgccycccgccycccgcacg  g        u    u          u   g    uc    cc 

Annotation confidence Not enough data

Genome context

Unknown

Mature mdm-miR156l

• Accession: MIMAT0025878
• Description: Malus domestica mdm-miR156l mature miRNA
• Sequence: 88 - UGACAGAAGAGAGUGAGCAC - 107
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47