miRBase entry: mdm-MIR162b

Stem-loop mdm-MIR162b


Accession
MI0023010
Description
Malus domestica mdm-MIR162b precursor miRNA
Gene family
MIPF0000127; MIR162_1

Literature search
6 open access papers mention mdm-MIR162b
(17 sentences)

Sequence

gcacuggaggcagcgguucaucgaucuguuuaugagauuuuguugugaguaaacacaguucaugaaucggUCGAUAAACCUCUGCAUCCAGcgc
((.(((((.((((.((((.(((((((.(((((((((....((((.......))))...))))))))).))))))).)))).)))).))))).))

Structure
  a     g    c    c       u         auuu    gu 
gc cugga gcag gguu aucgauc guuuaugag    uguu  g
|| ||||| |||| |||| ||||||| |||||||||    ||||  a
cg GACCU CGUC CCAA UAGCUgg uaaguacuu    acaa  g
  c     A    U    A       c         -gac    au 


Annotation confidence Not enough data
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Genome context
MDC020136.407: 72829-72922 [+]

Database links

Mature mdm-miR162b

Accession MIMAT0025906
Description Malus domestica mdm-miR162b mature miRNA
Sequence 71 - UCGAUAAACCUCUGCAUCCAG - 91
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22704043
    Apple miRNAs and tasiRNAs with novel regulatory networks
    Xia R, Zhu H, An YQ, Beers EP, Liu Z
    Genome Biol (2012) 13:R47