Stem-loop mdm-MIR164a

Accession

MI0023011

Description

Malus domestica mdm-MIR164a precursor miRNA

Literature search

8 open access papers mention mdm-MIR164a
(39 sentences)

Sequence

575 reads, 30.0 reads per million, 29 experiments

agggagaaugagccaugcUGGAGAAGCAGGGCACAUGCCagauauaucagcauugucugagaauuuugCAUGUGCUCUACCUCUCCAGCUuggacucucucccu
(((((((..((((((.((((((((.(.(((((((((((.((((...((((......))))..)))).))))))))))).).)))))))).))).))))))))))

Structure

       au   -   u        A C           C    aua    ca 
agggaga  gag cca gcUGGAGA G AGGGCACAUGC agau   ucag  u
|||||||  ||| ||| |||||||| | ||||||||||| ||||   ||||   
ucccucu  cuc ggu CGACCUCU C UCUCGUGUACg uuua   aguc  u
       --   a   U        C A           u    -ag    ug 

Annotation confidence High

Genome context

MDC019151.253: 7777-7880 [-]

Mature mdm-miR164a-5p

• Accession: MIMAT0025907
• Description: Malus domestica mdm-miR164a-5p mature miRNA
• Sequence: 19 - UGGAGAAGCAGGGCACAUGCC - 39
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR164a-3p

• Accession: MIMAT0056603
• Description: Malus domestica mdm-miR164a-3p mature miRNA
• Sequence: 69 - CAUGUGCUCUACCUCUCCAGCU - 90
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47