miRBase entry: mdm-MIR164a

Stem-loop mdm-MIR164a


Accession
MI0023011
Description
Malus domestica mdm-MIR164a precursor miRNA
Gene family
MIPF0000045; MIR164

Literature search
8 open access papers mention mdm-MIR164a
(39 sentences)

Sequence

agggagaaugagccaugcUGGAGAAGCAGGGCACAUGCCagauauaucagcauugucugagaauuuugcaugugcucuaccucuccagcuuggacucucucccu
(((((((..((((((.((((((((.(.(((((((((((.((((...((((......))))..)))).))))))))))).).)))))))).))).))))))))))

Structure
       au   -   u        A C           C    aua    ca 
agggaga  gag cca gcUGGAGA G AGGGCACAUGC agau   ucag  u
|||||||  ||| ||| |||||||| | ||||||||||| ||||   ||||   
ucccucu  cuc ggu cgaccucu c ucucguguacg uuua   aguc  u
       --   a   u        c a           u    -ag    ug 


Annotation confidence Not enough data
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Genome context
MDC019151.253: 7777-7880 [-]

Database links

Mature mdm-miR164a

Accession MIMAT0025907
Description Malus domestica mdm-miR164a mature miRNA
Sequence 19 - UGGAGAAGCAGGGCACAUGCC - 39
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22704043
    Apple miRNAs and tasiRNAs with novel regulatory networks
    Xia R, Zhu H, An YQ, Beers EP, Liu Z
    Genome Biol (2012) 13:R47