Stem-loop mdm-MIR166a

Accession

MI0023017

Description

Malus domestica mdm-MIR166a precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

8 open access papers mention mdm-MIR166a
(37 sentences)

Sequence

uugaggggaauguugucuggcucgaggacucuuuucauauugaucuauaauccccuagaucaacaaccuucauauauaucuauauguguauguauauguugcguguaucaacugcauacacagagaugaucaggugaauuagugucgUCGGACCAGGCUUCAUUCCCCccaa
.((.((((((((..((((((.((((.(((.((.(((((.((((((((........)))))))).............(((((...((((((((((...((((.......)))))))))))))).))))).....)))))..)).))).)))).))))))..)))))))).)).

Structure

u  a        uu      c    g   u  -u     auugaucuauaauccccuagaucaacaaccuucauaua     aua          uau    cg 
 ug ggggaaug  gucugg ucga gac cu  uucau                                      uaucu   uguguaugua   guug  u
 || ||||||||  |||||| |||| ||| ||  |||||                                      |||||   ||||||||||   ||||  g
 ac CCCCUUAC  CGGACC GGCU cug ga  aagug                                      guaga   acacauacgu   caac  u
a  c        UU      A    g   u  uu     ---------------------------------gacua     --g          ---    ua 

Annotation confidence Not enough data

Genome context

MDC011683.626: 7710-7881 [+]

Mature mdm-miR166a

• Accession: MIMAT0025913
• Description: Malus domestica mdm-miR166a mature miRNA
• Sequence: 148 - UCGGACCAGGCUUCAUUCCCC - 168
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47