Stem-loop mdm-MIR167e

Accession

MI0023030

Description

Malus domestica mdm-MIR167e precursor miRNA

Gene family

MIPF0000023; MIR167_1

Literature search

11 open access papers mention mdm-MIR167e
(200 sentences)

Sequence

ggaaaaagUGAAGCUGCCAGCAUGAUCUAgcuuurgcuaaagauauguacaaucacacauauauaugugruuaucaguucuauuaacucuagcuaggucaugcucugacagccucacuccuucc
((((..(((((.(((((.((((((((((((((...(.((((((..((......((((........)))).....))..))).))).)...))))))))))))))..).)))).)))))..))))

Structure

    aa     A    - -C              uur c   -   ua  uacaau    cau 
ggaa  agUGA GCUG C  AGCAUGAUCUAgcu   g uaa aga  ug      caca   a
||||  ||||| |||| |  ||||||||||||||   | ||| |||  ||      ||||    
ccuu  ucacu cgac g  ucguacuggaucga   c auu ucu  ac      gugu   u
    cc     c    a uc              ucu a   a   ug  -uauur    aua 

Annotation confidence Not enough data

Genome context

MDC016665.144: 18208-18331 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mdm-MIR167e

Mature mdm-miR167e

• Accession: MIMAT0025926
• Description: Malus domestica mdm-miR167e mature miRNA
• Sequence: 9 - UGAAGCUGCCAGCAUGAUCUA - 29
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47