miRBase entry: mdm-MIR171a

Stem-loop mdm-MIR171a


Accession
MI0023042
Description
Malus domestica mdm-MIR171a precursor miRNA
Gene family
MIPF0000030; MIR171_1

Literature search
9 open access papers mention mdm-MIR171a
(40 sentences)

Sequence

gaagguauugacgcgccucaauuugaacgrguggcuyauauuggagacuuaaccaugcgauucugaUUGAGCCGCGUCAAUAUCUCC
..(((((((((((((.(((((((.(((((.((((..................)))).)).))).))))))).)))))))))))))..

Structure
ga             c       u   -  r    cuyauauu 
  agguauugacgcg cucaauu gaa cg gugg        g
  ||||||||||||| ||||||| ||| || ||||         
  UCUAUAACUGCGC GAGUUag cuu gc uacc        g
CC             C       u   a  g    aauucaga 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature mdm-miR171a

Accession MIMAT0025938
Description Malus domestica mdm-miR171a mature miRNA
Sequence 67 - UUGAGCCGCGUCAAUAUCUCC - 87
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22704043
    Apple miRNAs and tasiRNAs with novel regulatory networks
    Xia R, Zhu H, An YQ, Beers EP, Liu Z
    Genome Biol (2012) 13:R47