Stem-loop mdm-MIR171d

Accession

MI0023045

Description

Malus domestica mdm-MIR171d precursor miRNA

Gene family

MIPF0000030; MIR171_1

Literature search

9 open access papers mention mdm-MIR171d
(40 sentences)

Sequence

gauguuggcucgauuucacucagagaagaagacugcuuacugcuuacugcugcaucugcauguacguaggaacauauguuaugguuggucucaugaaucUGAUUGAGCCGCGCCAAUAUC
(((((((((.((..((((.(((((..(..((((((((..((((.((((((.......))).))).)))).............)).))))))..)...))))).)))).)).)))))))))

Structure

         u  au    c     -ga ga      -  -----------ua    u   -   ug 
gauguuggc cg  uuca ucaga   a  agacug cu             cugc uac ugc  c
||||||||| ||  |||| |||||   |  |||||| ||             |||| ||| |||  a
CUAUAACCG GC  GAGU AGUcu   u  ucuggu gg             gaug aug acg  u
         C  -C    U     aag ac      u  uauuguauacaag    c   u   uc 

Annotation confidence Not enough data

Genome context

MDC022292.401: 1529-1648 [+]

Mature mdm-miR171d

• Accession: MIMAT0025941
• Description: Malus domestica mdm-miR171d mature miRNA
• Sequence: 100 - UGAUUGAGCCGCGCCAAUAUC - 120
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47