Stem-loop mdm-MIR172f

Accession

MI0023061

Description

Malus domestica mdm-MIR172f precursor miRNA

Literature search

14 open access papers mention mdm-MIR172f
(75 sentences)

Sequence

11609 reads, 1721.0 reads per million, 32 experiments

agucauuguuugcggguGCAGCAUCAUCAAGAUUCACAagugaguagugugacaugauuuaaucgauuuagucaugucgauugaacucgaggaguugAGAAUCUUGAUGAUGCUGCAUcagcaauagcugacu
(((((.(..((((.(((((((((((((((((((((.(((.(((((....((((((((((..........)))))))))).....))))....).))).))))))))))))))))))))).))))..).)))))

Structure

     u gu    g                     A   g ----    -agug          uaau 
aguca u  uugc gguGCAGCAUCAUCAAGAUUC CAa u    gagu     ugacaugauu    c
||||| |  |||| ||||||||||||||||||||| ||| |    ||||     ||||||||||     
ucagu g  aacg cUACGUCGUAGUAGUUCUAAG guu a    cuca     gcuguacuga    g
     c au    a                     A   g ggag    aguua          uuua 

Annotation confidence High

Genome context

MDC024416.57: 17180-17312 [-]

Mature mdm-miR172f-5p

• Accession: MIMAT0056643
• Description: Malus domestica mdm-miR172f-5p mature miRNA
• Sequence: 18 - GCAGCAUCAUCAAGAUUCACA - 38
• Evidence: experimental ; unknown

Mature mdm-miR172f-3p

• Accession: MIMAT0025957
• Description: Malus domestica mdm-miR172f-3p mature miRNA
• Sequence: 98 - AGAAUCUUGAUGAUGCUGCAU - 118
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47