miRBase entry: mdm-MIR172k

Stem-loop mdm-MIR172k


Accession
MI0023066
Description
Malus domestica mdm-MIR172k precursor miRNA
Gene family
MIPF0000035; MIR172

Literature search
14 open access papers mention mdm-MIR172k
(76 sentences)

Sequence

agucaguauucgcgggugcagcaucaucaagauucacauacaggcaagggggcuaccuuuaucgaucgaguaaauuguuaccgcaccaauaagaauauuuccuucaacuuccuuuuguacuugaaagguaguuccuucgaagugGGAAUCUUGAUGAUGCUGCAUcagcugguacaugacu
((((((((((.((.(((((((((((((((((((((.(((...((...((((((((((((......(((((((..(((((........))))).........................)))))))))))))))))))))...))).))))))))))))))))))))).)).))))).)))))

Structure
     -     c  g                     a   aca  caa            uaucga       -----------------------aa     acc 
aguca guauu gc ggugcagcaucaucaagauuc cau   gg   gggggcuaccuu      ucgagua                         uuguu   g
||||| ||||| || ||||||||||||||||||||| |||   ||   ||||||||||||      |||||||                         |||||    
ucagu caugg cg cUACGUCGUAGUAGUUCUAAG gug   cu   uccuugauggaa      aguucau                         aauaa   c
     a     u  a                     G   aag  ---            ------       guuuuccuucaacuuccuuuauaag     cca 


Annotation confidence Not enough data
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Genome context
MDC029352.33: 3377-3557 [+]

Database links

Mature mdm-miR172k

Accession MIMAT0025962
Description Malus domestica mdm-miR172k mature miRNA
Sequence 145 - GGAAUCUUGAUGAUGCUGCAU - 165
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22704043
    Apple miRNAs and tasiRNAs with novel regulatory networks
    Xia R, Zhu H, An YQ, Beers EP, Liu Z
    Genome Biol (2012) 13:R47