miRBase entry: mdm-MIR172o

Stem-loop mdm-MIR172o


Accession
MI0023070
Description
Malus domestica mdm-MIR172o precursor miRNA
Gene family
MIPF0000035; MIR172

Literature search
14 open access papers mention mdm-MIR172o
(77 sentences)

Sequence

agucacuuuuugcggguggagcaucuucaagauucacaaucuuauuugggcuccaauuuuagccccauuugaugauaugAGAAUCUUGAUGAUGCUGCAGcggcaauaaaugacu
(((((.((.((((.(.((.((((((.(((((((((.((((((((..((((((........)).))))..))).))).)).))))))))).)))))).)).).)))).)).)))))

Structure
     c  u    g g  g      u         a  -   -   uu    -  cca 
aguca uu uugc g ug agcauc ucaagauuc ca auc uua  uggg cu   a
||||| || |||| | || |||||| ||||||||| || ||| |||  |||| ||    
ucagu aa aacg c AC UCGUAG AGUUCUAAG gu uag agu  accc ga   u
     a  u    g G  G      U         A  a   u   uu    c  uuu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature mdm-miR172o

Accession MIMAT0025966
Description Malus domestica mdm-miR172o mature miRNA
Sequence 80 - AGAAUCUUGAUGAUGCUGCAG - 100
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22704043
    Apple miRNAs and tasiRNAs with novel regulatory networks
    Xia R, Zhu H, An YQ, Beers EP, Liu Z
    Genome Biol (2012) 13:R47