Stem-loop mdm-MIR390a

Accession

MI0023073

Description

Malus domestica mdm-MIR390a precursor miRNA

Gene family

MIPF0000101; MIR390

Literature search

5 open access papers mention mdm-MIR390a
(40 sentences)

Sequence

aguaagggagaaucuguaAAGCUCAGGAGGGAUAGCGCCauaugaacaaagggucuauuuacuaggugggcguuucuuuguucaucaugcgcuauccauccugaguuucauggcuucuucauacu
((((..((((((.((((.((((((((((.(((((((((...(((((((((((((((((((...))))))))...)))))))))))...))))))))).)))))))))).)))).)))))).))))

Structure

    ag      u    a          G         Cau           ---        a 
agua  ggagaa cugu AAGCUCAGGA GGAUAGCGC   augaacaaagg   gucuauuu  
||||  |||||| |||| |||||||||| |||||||||   |||||||||||   |||||||| c
ucau  cuucuu ggua uuugaguccu ccuaucgcg   uacuuguuucu   cgggugga  
    -a      c    c          a         uac           uug        u 

Annotation confidence Not enough data

Genome context

MDC019512.230: 19835-19959 [+]

Mature mdm-miR390a

• Accession: MIMAT0025969
• Description: Malus domestica mdm-miR390a mature miRNA
• Sequence: 19 - AAGCUCAGGAGGGAUAGCGCC - 39
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47