Stem-loop mdm-MIR393c

Accession

MI0023081

Description

Malus domestica mdm-MIR393c precursor miRNA

Gene family

MIPF0000083; MIR393

Literature search

6 open access papers mention mdm-MIR393c
(31 sentences)

Sequence

gguggaggcuUCCAAAGGGAUCGCAUUGAUCUaauugaucagauaugucaaacaucauccgcauagacauaugguggguuauguuuucgucuguguagucggaucaugcgaucccuucggacguuuccauc
(((((((((.(((.((((((((((((.(((((.((((..(((((.....((((((.(((((((((....))).)))))).))))))..)))))..)))).))))))))))))))))).))).)))))))))

Structure

         u   A            U     a    au     auguc      c      -   g 
gguggaggc UCC AAGGGAUCGCAU GAUCU auug  cagau     aaacau auccgc aua a
||||||||| ||| |||||||||||| ||||| ||||  |||||     |||||| |||||| |||  
cuaccuuug agg uucccuagcgua cuagg ugau  gucug     uuugua ugggug uau c
         c   c            -     c    gu     ---cu      u      g   a 

Annotation confidence Not enough data

Genome context

MDC005391.195: 248-378 [+]

Mature mdm-miR393c

• Accession: MIMAT0025977
• Description: Malus domestica mdm-miR393c mature miRNA
• Sequence: 11 - UCCAAAGGGAUCGCAUUGAUCU - 32
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47