Stem-loop mdm-MIR395d

Accession

MI0023087

Description

Malus domestica mdm-MIR395d precursor miRNA

Gene family

MIPF0000016; MIR395

Literature search

5 open access papers mention mdm-MIR395d
(50 sentences)

Sequence

aucagguguccccuagaGUUCCCUUGACCACUUCAUUGggaggugagagaucaaucguggauaugguuuucgaacaauuguccuccacuccuccuauguauuccuaCUGAAGUGUUUGGGGGAACUCcuggugucauaugau
((((.(((.(.((..((((((((((((.(((((((.(((((((((.(((..((((.((.((........))..)).))))..)))))))............))))).))))))).))))))))))))..)).).))).))))

Structure

    g   u c  ua            C       U     ------------    a   au    c  -g  uau 
auca gug c cc  gaGUUCCCUUGA CACUUCA UGgga            ggug gag  caau gu  ga   g
|||| ||| | ||  |||||||||||| ||||||| |||||            |||| |||  |||| ||  ||    
uagu uac g gg  CUCAAGGGGGUU GUGAAGU auccu            ucac cuc  guua ca  cu   g
    a   u u  uc            U       C     uauguauccucc    -   cu    a  ag  uuu 

Annotation confidence Not enough data

Genome context

MDC003846.250: 17630-17771 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from mdm-MIR395d

Mature mdm-miR395d-3p

• Accession: MIMAT0025983
• Description: Malus domestica mdm-miR395d-3p mature miRNA
• Sequence: 107 - CUGAAGUGUUUGGGGGAACUC - 127
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR395d-5p

• Accession: MIMAT0037469
• Description: Malus domestica mdm-miR395d-5p mature miRNA
• Sequence: 18 - GUUCCCUUGACCACUUCAUUG - 38
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47


2. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812