Stem-loop mdm-MIR395g

Accession

MI0023090

Description

Malus domestica mdm-MIR395g precursor miRNA

Literature search

5 open access papers mention mdm-MIR395g
(49 sentences)

Sequence

gaaaagaauaaggucugcaaugcuaucagguguuaccaagaGUUCCCUUGACCACUUCAUUGggaaauagucucuuuuguaacuauaaauccuaCUGAAGUGUUUGGGGGAACUCcugguugcauuugauuuuacaaagaacaaaaauuauc
.............(((........(((((((((.((((.((((((((((((.(((((((.(((((.(((((..(....)..)))))...))))).))))))).)))))))))))).)))).))))))))).......)))............

Structure

gaaaagaauaagg   gcaaugcu         u    a            C       U     --a     cu u 
             ucu        aucaggugu acca gaGUUCCCUUGA CACUUCA UGgga   auagu  c u
             |||        ||||||||| |||| |||||||||||| ||||||| |||||   |||||  |  
             aga        uaguuuacg uggu CUCAAGGGGGUU GUGAAGU auccu   uauca  g u
-cuauuaaaaaca   -aacauuu         u    c            U       C     aaa     au u 

Annotation confidence Not enough data

Genome context

MDC003846.250: 11880-12031 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from mdm-MIR395g

Mature mdm-miR395g-3p

• Accession: MIMAT0025986
• Description: Malus domestica mdm-miR395g-3p mature miRNA
• Sequence: 95 - CUGAAGUGUUUGGGGGAACUC - 115
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR395g-5p

• Accession: MIMAT0037470
• Description: Malus domestica mdm-miR395g-5p mature miRNA
• Sequence: 42 - GUUCCCUUGACCACUUCAUUG - 62
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47


2. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812